Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

TEvarSim: A genome simulator for transposable element (TE) variants.

PLoS computational biology - 1 Jan 2026

Miao Jian, Li Dawei

Abstract excerpt

Transposable element (TE) variants, the presence or absence of TE sequences such as LINE-1, Alu, SVA, and endogenous retroviruses, are a major source of genomic diversity and play critical roles in human health, evolution, and disease. As interest in TE variants grows, developing related methods and tools for detection has become increasingly important. However, rigorous benchmarking of TE variant detection...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Computer Simulation
Share to DNA Transposable Elements

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genetic Variation

Share to Genomics

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 41616024
DOI: 10.1371/journal.pcbi.1013933
PMCID: PMC12875575

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

TEvarSim: A genome simulator for transposable element (TE) variants.PMID 41616024Read ↗

ERVcaller: Identify polymorphic endogenous retrovirus (ERV) and other transposable element (TE) insertions using whole-genome sequencing dataSemantic proximity Read ↗

Systematic comparative benchmarking of computational methods for the detection of transposable elements in long-read sequencing dataSemantic proximity Read ↗

A Pangenome Approach to Detect and Genotype TE Insertion Polymorphisms.Semantic proximity Read ↗

A Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Graph GenomesSemantic proximity Read ↗

Comprehensive identification of transposable element insertions using multiple sequencing technologies.Semantic proximity Read ↗

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing dataSemantic proximity Read ↗

Benchmarking computational tools for polymorphic transposable element detection.Semantic proximity Read ↗

Active Human Transposable Elements: Long-Read Sequencing Technologies, Computational Analysis, and Implications for Human DiseaseSemantic proximity Read ↗

Tangram: a comprehensive toolbox for mobile element insertion detection.Semantic proximity Read ↗

Identification and Genotyping of Transposable Element Insertions From Genome Sequencing Data.Semantic proximity Read ↗

BVSim: A benchmarking variation simulator mimicking human variation spectrum.Semantic proximity Read ↗

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.