Article
Predicting bacterial promoter function and evolution from random sequences.
eLife - 26 Jan 2022
Lagator Mato, Sarikas Srdjan, Steinrueck Magdalena, Toledo-Aparicio David, Bollback Jonathan P, Guet Calin C, Tkačik Gašper
Abstract excerpt
Predicting function from sequence is a central problem of biology. Currently, this is possible only locally in a narrow mutational neighborhood around a wildtype sequence rather than globally from any sequence. Using random mutant libraries, we developed a biophysical model that accounts for multiple features of σ70 binding bacterial promoters to predict constitutive gene expression levels from any sequence. We...
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