Article
Atlas of clinically distinct cell states and ecosystems across human solid tumors.
Cell - 14 Oct 2021
Luca Bogdan A, Steen Chloé B, Matusiak Magdalena, Azizi Armon, Varma Sushama, Zhu Chunfang, Przybyl Joanna, Espín-Pérez Almudena, Diehn Maximilian, Alizadeh Ash A, van de Rijn Matt, Gentles Andrew J, Newman Aaron M
Abstract excerpt
Determining how cells vary with their local signaling environment and organize into distinct cellular communities is critical for understanding processes as diverse as development, aging, and cancer. Here we introduce EcoTyper, a machine learning framework for large-scale identification and validation of cell states and multicellular communities from bulk, single-cell, and spatially resolved gene expression data....
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