Article
Speeding up eQTL scans in the BXD population using GPUs.
G3 (Bethesda, Md.) - 8 Dec 2021
Trotter Chelsea, Kim Hyeonju, Farage Gregory, Prins Pjotr, Williams Robert W, Broman Karl W, Sen Śaunak
Abstract excerpt
The BXD family of mouse strains are an important reference population for systems biology and genetics that have been fully sequenced and deeply phenotyped. To facilitate interactive use of genotype-phenotype relations using many massive omics data sets for this and other segregating populations, we have developed new algorithms and code that enable near-real-time whole-genome quantitative trait locus (QTL) scans...
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