Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences.

Nucleic acids research - 11 Jan 2021

Georgakopoulos-Soares Ilias, Mouratidis Ioannis, Parada Guillermo E, Matharu Navneet, Hemberg Martin, Ahituv Nadav

Abstract excerpt

DNA strand asymmetries can have a major effect on several biological functions, including replication, transcription and transcription factor binding. As such, DNA strand asymmetries and mutational strand bias can provide information about biological function. However, a versatile tool to explore this does not exist. Here, we present Asymmetron, a user-friendly computational tool that performs statistical...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to A549 Cells
Share to Algorithms

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Cell Line, Transformed

Share to Computational Biology

Share to DNA Replication

Share to Hep G2 Cells

Share to K562 Cells

Share to MCF-7 Cells

Source

Open in PubMed Open full text

Identifiers

PMID: 33211865
DOI: 10.1093/nar/gkaa1052
PMCID: PMC7797064

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences.PMID 33211865Read ↗

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strandsSemantic proximity Read ↗

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.Semantic proximity Read ↗

Janus--a comprehensive tool investigating the two faces of transcription.Semantic proximity Read ↗

Replication-associated mutational asymmetry in the human genome.Semantic proximity Read ↗

Surveying mutation density patterns around specific genomic features.Semantic proximity Read ↗

Comparative Analysis of DNA Structural Parameters and the Corresponding Computational Tools to Differentiate Regulatory DNA Motifs and PromotersSemantic proximity Read ↗

AllelicImbalance: an R/bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing.Semantic proximity Read ↗

GraphDNA: a Java program for graphical display of DNA composition analyses.Semantic proximity Read ↗

OKseqHMM: a genome-wide replication fork directionality analysis toolkitSemantic proximity Read ↗

HSeeker: an algorithm for systematic H-DNA sequence identificationSemantic proximity Read ↗

Decoding RNA Triple Helices: Identification from Sequence and Secondary StructureSemantic proximity Read ↗

Strand compositional asymmetries in vertebrate large genes.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.