Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

HATK: HLA analysis toolkit.

Bioinformatics (Oxford, England) - 20 Apr 2021

Choi Wanson, Luo Yang, Raychaudhuri Soumya, Han Buhm

Abstract excerpt

SUMMARY: Fine-mapping human leukocyte antigen (HLA) genes involved in disease susceptibility to individual alleles or amino acid residues has been challenging. Using information regarding HLA alleles obtained from HLA typing, HLA imputation or HLA inference, our software expands the alleles to amino acid sequences using the most recent IMGT/HLA database and prepares a dataset suitable for fine-mapping analysis....

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Alleles
Share to Amino Acid Sequence
Share to Chromosome Mapping

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genetic Predisposition to Disease

Share to Histocompatibility Testing

Share to HLA Antigens

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 32735319
DOI: 10.1093/bioinformatics/btaa684
PMCID: PMC8058762

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

HATK: HLA analysis toolkit.PMID 32735319Read ↗

Easy-HLA: a validated web application suite to reveal the full details of HLA typing.Semantic proximity Read ↗

Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease.Semantic proximity Read ↗

Benchmarking freely available human leukocyte antigen typing algorithms across varying genes, coverages and typing resolutionsSemantic proximity Read ↗

Approaching Genetics Through the MHC Lens: Tools and Methods for HLA ResearchSemantic proximity Read ↗

Hla-mapper: An application to optimize the mapping of HLA sequences produced by massively parallel sequencing procedures.Semantic proximity Read ↗

Phenome-wide HLA association landscape of 235,000 Finnish biobank participantsSemantic proximity Read ↗

High-Definition Genomic Analysis of HLA Genes Via Comprehensive HLA Allele Genotyping.Semantic proximity Read ↗

Benchmark of tools for <i>in silico</i> prediction of MHC class I and class II genotypes from NGS dataSemantic proximity Read ↗

NovAT tool-Reliable novel HLA alleles identification from next-generation sequencing data.Semantic proximity Read ↗

PGG.MHC: toward understanding the diversity of major histocompatibility complexes in human populations.Semantic proximity Read ↗

A statistical genetics guide to identifying HLA alleles driving complex diseaseSemantic proximity Read ↗

SKDM human leukocyte antigen (HLA) tool: A comprehensive HLA and disease associations analysis software.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.