Article
An integrative ENCODE resource for cancer genomics.
Nature communications - 29 Jul 2020
Zhang Jing, Lee Donghoon, Dhiman Vineet, Jiang Peng, Xu Jie, McGillivray Patrick, Yang Hongbo, Liu Jason, Meyerson William, Clarke Declan, Gu Mengting, Li Shantao, Lou Shaoke, Xu Jinrui, Lochovsky Lucas, Ung Matthew, Ma Lijia, Yu Shan, Cao Qin, Harmanci Arif, Yan Koon-Kiu, Sethi Anurag, Gürsoy Gamze, Schoenberg Michael Rutenberg, Rozowsky Joel, Warrell Jonathan, Emani Prashant, Yang Yucheng T, Galeev Timur, Kong Xiangmeng, Liu Shuang, Li Xiaotong, Krishnan Jayanth, Feng Yanlin, Rivera-Mulia Juan Carlos, Adrian Jessica, Broach James R, Bolt Michael, Moran Jennifer, Fitzgerald Dominic, Dileep Vishnu, Liu Tingting, Mei Shenglin, Sasaki Takayo, Trevilla-Garcia Claudia, Wang Su, Wang Yanli, Zang Chongzhi, Wang Daifeng, Klein Robert J, Snyder Michael, Gilbert David M, Yip Kevin, Cheng Chao, Yue Feng, Liu X Shirley, White Kevin P, Gerstein Mark
Abstract excerpt
ENCODE comprises thousands of functional genomics datasets, and the encyclopedia covers hundreds of cell types, providing a universal annotation for genome interpretation. However, for particular applications, it may be advantageous to use a customized annotation. Here, we develop such a custom annotation by leveraging advanced assays, such as eCLIP, Hi-C, and whole-genome STARR-seq on a number of data-rich...
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