Article
Ancestral inference from haplotypes and mutations.
Theoretical population biology - 1 Jul 2018
Griffiths Robert C, Tavaré Simon
Abstract excerpt
We consider inference about the history of a sample of DNA sequences, conditional upon the haplotype counts and the number of segregating sites observed at the present time. After deriving some theoretical results in the coalescent setting, we implement rejection sampling and importance sampling schemes to perform the inference. The importance sampling scheme addresses an extension of the Ewens Sampling Formula...
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