Article
A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing.
PloS one - 1 Jan 2016
Ting Chuan-Kang, Lin Choun-Sea, Chan Ming-Tsai, Chen Jian-Wei, Chuang Sheng-Yu, Huang Yao-Ting
Abstract excerpt
The genome of many species in the biosphere is a diploid consisting of paternal and maternal haplotypes. The differences between these two haplotypes range from single nucleotide polymorphisms (SNPs) to large-scale structural variations (SVs). Existing genome assemblers for next-generation sequencing platforms attempt to reconstruct one consensus sequence, which is a mosaic of two parental haplotypes....
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