Article
angsd-wrapper: utilities for analysing next-generation sequencing data.
Molecular ecology resources - 1 Nov 2016
Durvasula Arun, Hoffman Paul J, Kent Tyler V, Liu Chaochih, Kono Thomas J Y, Morrell Peter L, Ross-Ibarra Jeffrey
Abstract excerpt
High-throughput sequencing has changed many aspects of population genetics, molecular ecology and related fields, affecting both experimental design and data analysis. The software package angsd allows users to perform a number of population genetic analyses on high-throughput sequencing data. angsd uses probabilistic approaches which can directly make use of genotype likelihoods; thus, SNP calling is not...
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