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Article

PopGLen-a Snakemake pipeline for performing population genomic analyses using genotype likelihood-based methods.

Bioinformatics (Oxford, England) - 4 Mar 2025

Nolen Zachary J

Abstract excerpt

SUMMARY: PopGLen is a Snakemake workflow for performing population genomic analyses within a genotype-likelihood framework, integrating steps for raw sequence processing of both historical and modern DNA, quality control, multiple filtering schemes, and population genomic analysis. Currently, the population genomic analyses included allow for estimating linkage disequilibrium, kinship, genetic diversity, genetic...

Read the complete abstract on PubMed

Topics

Software
Genomics
Genotype
Genetics, Population
Likelihood Functions
Linkage Disequilibrium
Sequence Analysis, DNA

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Humans

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Identifiers

PMID: 40067089
DOI: 10.1093/bioinformatics/btaf105
PMCID: PMC11932725

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