Variant calling in nonmodel organisms with snpArcher.

Abstract excerpt

Population genomic studies in nonmodel organisms increasingly depend on whole-genome resequencing, yet translating raw reads into reliable variant callsets remains a practical challenge due to the complexity of multistep bioinformatics pipelines and the absence of species-specific best practices. Here, we present a step-by-step protocol for snpArcher, a Snakemake-based workflow that takes raw sequencing reads and...

Topics

• Animals
• Software
• Strigiformes
• Polymorphism, Single Nucleotide
• Computational Biology
• Genetics, Population