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Article

4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.

BMC bioinformatics - 19 Jan 2016

Pina-Martins Francisco, Vieira Bruno M, Seabra Sofia G, Batista Dora, Paulo Octávio S

Abstract excerpt

BACKGROUND: Next-generation sequencing datasets are becoming more frequent, and their use in population studies is becoming widespread. For non-model species, without a reference genome, it is possible from a panel of individuals to identify a set of SNPs that can be used for further population genotyping. However the lack of a reference genome to which the sequenced data could be compared makes the finding of...

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Identifiers

PMID: 26787189
DOI: 10.1186/s12859-016-0892-1
PMCID: PMC4719533

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

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