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Article

PineSAP--sequence alignment and SNP identification pipeline.

Bioinformatics (Oxford, England) - 1 Oct 2009

Wegrzyn Jill L, Lee Jennifer M, Liechty John, Neale David B

Abstract excerpt

UNLABELLED: The Pine Alignment and SNP Identification Pipeline (PineSAP) provides a high-throughput solution to single nucleotide polymorphism (SNP) prediction using multiple sequence alignments from re-sequencing data. This pipeline integrates a hybrid of customized scripting, existing utilities and machine learning in order to increase the speed and accuracy of SNP calls. The implementation of this pipeline...

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Identifiers

PMID: 19667082
DOI: 10.1093/bioinformatics/btp477
PMCID: PMC2752621

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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