Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

VEGAWES: variational segmentation on whole exome sequencing for copy number detection.

BMC bioinformatics - 29 Sept 2015

Anjum Samreen, Morganella Sandro, D'Angelo Fulvio, Iavarone Antonio, Ceccarelli Michele

Abstract excerpt

BACKGROUND: Copy number variations are important in the detection and progression of significant tumors and diseases. Recently, Whole Exome Sequencing is gaining popularity with copy number variations detection due to low cost and better efficiency. In this work, we developed VEGAWES for accurate and robust detection of copy number variations on WES data. VEGAWES is an extension to a variational based...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Area Under Curve
Share to Brain Neoplasms

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to DNA Copy Number Variations

Share to Glioblastoma

Share to High-Throughput Nucleotide Sequencing

Share to ROC Curve

Source

Open in PubMed Open full text

Identifiers

PMID: 26416038
DOI: 10.1186/s12859-015-0748-0
PMCID: PMC4587906

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

VEGAWES: variational segmentation on whole exome sequencing for copy number detection.PMID 26416038Read ↗

Robust somatic copy number estimation using coarse-to-fine segmentationSemantic proximity Read ↗

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing dataSemantic proximity Read ↗

CESAR: A R Package for High-Sensitivity Detection of Copy Number Variations in ctDNA Using Segmentation and Anchor RecalibrationSemantic proximity Read ↗

An integrative segmentation method for detecting germline copy number variations in SNP arrays.Semantic proximity Read ↗

A Bayesian segmentation approach to ascertain copy number variations at the population level.Semantic proximity Read ↗

Resolving single-cell copy number profiling for large datasetsSemantic proximity Read ↗

EXCAVATOR: detecting copy number variants from whole-exome sequencing data.Semantic proximity Read ↗

CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.Semantic proximity Read ↗

Reconstructing DNA copy number by joint segmentation of multiple sequences.Semantic proximity Read ↗

CNSistent integration and feature extraction from somatic copy number profilesSemantic proximity Read ↗

Improved allele-specific single-cell copy number estimation in low-coverage DNA-sequencing.Semantic proximity Read ↗

Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and miceSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.