Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus.

Molecular biology and evolution - 1 Nov 2015

Illingworth Christopher J R

Abstract excerpt

We present a method to infer the role of selection acting during the within-host evolution of the influenza virus from short-read genome sequence data. Linkage disequilibrium between loci is accounted for by treating short-read sequences as noisy multilocus emissions from an underlying model of h...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Adaptation, Physiological
Share to Ferrets
Share to Genetic Fitness

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Hemagglutinin Glycoproteins, Influenza Virus

Share to Influenza A Virus, H5N1 Subtype

Share to Influenza, Human

Share to Orthomyxoviridae Infections

Share to Reassortant Viruses

Source

Open in PubMed Open full text

Identifiers

PMID: 26243288
DOI: 10.1093/molbev/msv171
PMCID: PMC4651230

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-26243288-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus.PMID 26243288Read ↗

A novel framework for inferring parameters of transmission from viral sequence dataSemantic proximity Read ↗

Principles of dengue virus evolvability derived from genotype-fitness maps in human and mosquito cellsSemantic proximity Read ↗

Learning the fitness dynamics of pathogens from phylogeniesSemantic proximity Read ↗

Estimating Fitness of Viral Quasispecies from Next-Generation Sequencing Data.Semantic proximity Read ↗

Two fitness inference schemes compared using allele frequencies from 1068 391 sequences sampled in the UK during the COVID-19 pandemic.Semantic proximity Read ↗

Inferring Epistasis from Genetic Time-series Data.Semantic proximity Read ↗

Fitness Estimation for Viral Variants in the Context of Cellular Coinfection.Semantic proximity Read ↗

Fitness inference tested by in silico population genetics.Semantic proximity Read ↗

Mean-field computational approach to HIV dynamics on a fitness landscapeSemantic proximity Read ↗

Inferring the distribution of fitness effects in patient-sampled and experimental virus populations: two case studies.Semantic proximity Read ↗

Inferring the intrinsic mutational fitness landscape of influenza-like evolving antigens from temporally ordered sequence dataSemantic proximity Read ↗

How to infer relative fitness from a sample of genomic sequences.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.