Article

Learning the fitness dynamics of pathogens from phylogenies

2023-12-28

Abstract excerpt

The dynamics of pathogen genetic diversity, including the emergence of lineages with increased fitness, is a foundational concept of disease ecology with key public health implications. However, the identification of distinct lineages and estimation of associated fitness remain challenging, and are rarely done outside densely sampled systems. Here, we present a scalable framework that summarizes changes in populat...

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Literature Corpus work: 0fcab1a1-29cd-5c29-bb8f-ed18dfa297e4
DOI: 10.1101/2023.12.23.23300456

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