Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.

Journal of virology - 1 Jun 2014

McCloskey Rosemary M, Liang Richard H, Harrigan P Richard, Brumme Zabrina L, Poon Art F Y

Abstract excerpt

UNLABELLED: A population of human immunodeficiency virus (HIV) within a host often descends from a single transmitted/founder virus. The high mutation rate of HIV, coupled with long delays between infection and diagnosis, make isolating and characterizing this strain a challenge. In theory, ancestral reconstruction could be used to recover this strain from sequences sampled in chronic infection; however, the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bayes Theorem
Share to Classification

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Databases, Genetic

Share to Evolution, Molecular

Share to INDEL Mutation

Share to Models, Genetic

Share to Sequence Analysis, DNA

Source

Open in PubMed Open full text

Identifiers

PMID: 24648453
DOI: 10.1128/JVI.00483-14
PMCID: PMC4093844

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.PMID 24648453Read ↗

Phylogenetic patterns recover known HIV epidemiological relationships and reveal common transmission of multiple variantsSemantic proximity Read ↗

Bayesian Phylogenetic Inference of HIV Latent Lineage Ages Using Serial SequencesSemantic proximity Read ↗

Phylogenetic approach to recover integration dates of latent HIV sequences within-hostSemantic proximity Read ↗

Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.Semantic proximity Read ↗

Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4+ T Cell Subsets during Long-Term Combination Antiretroviral Therapy.Semantic proximity Read ↗

Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data.Semantic proximity Read ↗

HIV phylogeneticsSemantic proximity Read ↗

Phylogenetics in HIV transmissionSemantic proximity Read ↗

HIV evolution and diversity in ART-treated patients.Semantic proximity Read ↗

Phylogenetically resolving epidemiologic linkage.Semantic proximity Read ↗

The evolution of HIV: inferences using phylogenetics.Semantic proximity Read ↗

HIV-1 genetic diversity and divergence and its correlation with disease progression among antiretroviral naïve recently infected individuals.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.