Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Inference of global HIV-1 sequence patterns and preliminary feature analysis.

Virologica Sinica - 1 Aug 2013

Wang Yan, Rawi Reda, Hoffmann Daniel, Sun Binlian, Yang Rongge

Abstract excerpt

The epidemiology of HIV-1 varies in different areas of the world, and it is possible that this complexity may leave unique footprints in the viral genome. Thus, we attempted to find significant patterns in global HIV-1 genome sequences. By applying the rule inference algorithm RIPPER (Repeated Incremental Pruning to Produce Error Reduction) to multiple sequence alignments of Env sequences from four classes of...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to env Gene Products, Human Immunodeficiency Virus

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Global Health

Share to HIV Infections

Share to Molecular Epidemiology

Share to Phylogeography

Share to Sequence Homology, Nucleic Acid

Source

Open in PubMed Open full text

Identifiers

PMID: 23913180
DOI: 10.1007/s12250-013-3348-z
PMCID: PMC8208351

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Inference of global HIV-1 sequence patterns and preliminary feature analysis.PMID 23913180Read ↗

Global Analysis of Sequence Diversity within HIV-1 Subtypes across Geographic RegionsSemantic proximity Read ↗

Genetic Characterization of HIV Type 1 Tat Exon 1 from a Southern Indian Clinical Cohort: Identification of Unique Epidemiological Signature ResiduesSemantic proximity Read ↗

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East AfricaSemantic proximity Read ↗

The global transmission network of HIV-1.Semantic proximity Read ↗

Phylodynamics of HIV-1 subtype C epidemic in east Africa.Semantic proximity Read ↗

A new pattern-based method for identifying recent HIV-1 infections from the viral env sequence.Semantic proximity Read ↗

HIV-1 Vif global diversity and possible APOBEC-mediated response since 1980Semantic proximity Read ↗

Geospatial HIV-1 subtype C gp120 sequence diversity and its predicted impact on broadly neutralizing antibody sensitivitySemantic proximity Read ↗

A unified classification system for HIV-1 5’ long terminal repeatsSemantic proximity Read ↗

Dissecting the dynamics of HIV-1 protein sequence diversity.Semantic proximity Read ↗

Transmitted/Founder HIV-1 Subtype C Viruses Show Distinctive Signature Patterns in Vif, Vpr, and Vpu That Are Under Subsequent Immune Pressure During Early Infection.Semantic proximity Read ↗

In-depth investigation of the point mutation pattern of HIV-1.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.