Article
An integrated computational environment for elementary modes analysis of biochemical networks.
International journal of data mining and bioinformatics - 1 Jan 2012
Maia Paulo, Vilaça Paulo, Rocha Isabel, Pont Marcellinus, Tomb Jean-François, Rocha Miguel
Abstract excerpt
Elementary flux modes (EFMs) have been claimed as one of the most promising approaches for pathway analysis. These are a set of vectors that emerge from the stoichiometric matrix of a biochemical network through the use of convex analysis. The computation of all EFMs of a given network is an NP-hard problem and existing algorithms do not scale well. Moreover, the analysis of results is difficult given the...
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