Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

CBDB: the codon bias database.

BMC bioinformatics - 26 Apr 2012

Hilterbrand Adam, Saelens Joseph, Putonti Catherine

Abstract excerpt

BACKGROUND: In many genomes, a clear preference in the usage of particular codons exists. The mechanisms that induce codon biases remain an open question; studies have attributed codon usage to translational selection, mutational bias and drift. Furthermore, correlations between codon usage within host genomes and their viral pathogens have been observed for a myriad of host-virus systems. As such, numerous...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Mutation
Share to Genome, Bacterial
Share to Internet

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Bacteria

Share to Bacteriophages

Share to Databases, Nucleic Acid

Source

Open in PubMed Open full text

Identifiers

PMID: 22536831
DOI: 10.1186/1471-2105-13-62
PMCID: PMC3463423

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

CBDB: the codon bias database.PMID 22536831Read ↗

The Dynamic Codon Biaser: calculating prokaryotic codon usage biases.Semantic proximity Read ↗

Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles.Semantic proximity Read ↗

A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes.Semantic proximity Read ↗

Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance.Semantic proximity Read ↗

Enhanced effective codon numbers to understand codon usage bias.Semantic proximity Read ↗

Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation.Semantic proximity Read ↗

Codon Bias as a Means to Fine-Tune Gene Expression.Semantic proximity Read ↗

Codon usage bias and environmental adaptation in microbial organisms.Semantic proximity Read ↗

scnRCA: a novel method to detect consistent patterns of translational selection in mutationally-biased genomes.Semantic proximity Read ↗

Codon usage pattern and its influencing factors in different genomes of hepadnaviruses.Semantic proximity Read ↗

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization.Semantic proximity Read ↗

Codon usage bias in prokaryotic genomes and environmental adaptationSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.