Article
An empirical comparison of several recent epistatic interaction detection methods.
Bioinformatics (Oxford, England) - 1 Nov 2011
Wang Yue, Liu Guimei, Feng Mengling, Wong Limsoon
Abstract excerpt
MOTIVATION: Many new methods have recently been proposed for detecting epistatic interactions in GWAS data. There is, however, no in-depth independent comparison of these methods yet. RESULTS: Five recent methods-TEAM, BOOST, SNPHarvester, SNPRuler and Screen and Clean (SC)-are evaluated here in terms of power, type-1 error rate, scalability and completeness. In terms of power, TEAM performs best on data with...
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