Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Predicting allele frequencies in DNA pools using high density SNP genotyping data.

Animal genetics - 1 Feb 2011

Peiris B L, Ralph J, Lamont S J, Dekkers J C M

Abstract excerpt

To evaluate the ability to use DNA pools with the Illumina Infinium genotyping platform, two sets of gradient pools were created using two pairs of highly inbred chicken lines. Replicate pools containing 0%, 10%, 20%, 40%, 60%, 80%, 90% and 100% of DNA from line A vs. B or line C vs. D were created, for a total of 28 pools. All pools were genotyped for 12,046 SNPs. Three frequency estimation methods proposed in...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Animals, Inbred Strains
Share to Chickens
Share to Gene Frequency

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genetic Techniques

Share to Polymorphism, Single Nucleotide

Source

Identifiers

PMID: 20497157
DOI: 10.1111/j.1365-2052.2010.02077.x

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Predicting allele frequencies in DNA pools using high density SNP genotyping data.PMID 20497157Read ↗

Rapid identification of single nucleotide polymorphisms and estimation of allele frequencies using sequence traces from DNA pools.Semantic proximity Read ↗

SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools.Semantic proximity Read ↗

High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR.Semantic proximity Read ↗

On optimal pooling designs to identify rare variants through massive resequencing.Semantic proximity Read ↗

An evaluation of allele frequency estimation accuracy using pooled sequencing data.Semantic proximity Read ↗

Applicability and performance evaluation of the Shennong 1 chicken 40 K liquid chip in commercial chicken populations.Semantic proximity Read ↗

Development and application of a 10 K low-density whole-genome SNP array for chickens.Semantic proximity Read ↗

Accuracy of genomic prediction using an evenly spaced, low-density single nucleotide polymorphism panel in broiler chickens.Semantic proximity Read ↗

Quantitative determination of allele frequency in pooled DNA by using sequencing method.Semantic proximity Read ↗

Pyrosequencing-based SNP allele frequency estimation in DNA pools.Semantic proximity Read ↗

High-throughput screening for evidence of association by using mass spectrometry genotyping on DNA pools.Semantic proximity Read ↗

New adjustment factors and sample size calculation in a DNA-pooling experiment with preferential amplification.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.