Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Protein structure alignment considering phenotypic plasticity.

Bioinformatics (Oxford, England) - 15 Aug 2008

Csaba Gergely, Birzele Fabian, Zimmer Ralf

Abstract excerpt

MOTIVATION: Protein structure comparison exhibits differences and similarities of proteins and protein families and may help to elucidate protein sequence and structure evolution. Despite many methods to score protein structure similarity with and without flexibility and to align proteins accurately based on their structures, a meaningful evolutionary distance measure and alignment method which models the cost of...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Computer Simulation
Share to Evolution, Molecular

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Models, Chemical

Share to Models, Molecular

Share to Proteins

Share to Sequence Alignment

Share to Sequence Analysis

Source

Identifiers

PMID: 18689847
DOI: 10.1093/bioinformatics/btn271

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Protein structure alignment considering phenotypic plasticity.PMID 18689847Read ↗

Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology.Semantic proximity Read ↗

Detection of protein symmetry and structural rearrangements using secondary structure elements.Semantic proximity Read ↗

An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins.Semantic proximity Read ↗

The exchangeability of amino acids in proteins.Semantic proximity Read ↗

Evolutionary trace report_maker: a new type of service for comparative analysis of proteins.Semantic proximity Read ↗

A biological cosmos of parallel universes: does protein structural plasticity facilitate evolution?Semantic proximity Read ↗

A method for predicting evolved fold switchers exclusively from their sequencesSemantic proximity Read ↗

Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix.Semantic proximity Read ↗

A metric model of amino acid substitution.Semantic proximity Read ↗

Align-m--a new algorithm for multiple alignment of highly divergent sequences.Semantic proximity Read ↗

The effect of sequence evolution on protein structural divergence.Semantic proximity Read ↗

Morpheus-3D: Structural Diversity-Guided Detection and Localization of Protein Fold SwitchingSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.