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Article

Analysis of superfamily specific profile-profile recognition accuracy.

BMC bioinformatics - 16 Dec 2004

Casbon James A, Saqi Mansoor A S

Abstract excerpt

BACKGROUND: Annotation of sequences that share little similarity to sequences of known function remains a major obstacle in genome annotation. Some of the best methods of detecting remote relationships between protein sequences are based on matching sequence profiles. We analyse the superfamily specific performance of sequence profile-profile matching. Our benchmark consists of a set of 16 protein superfamilies...

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Identifiers

PMID: 15603591
DOI: 10.1186/1471-2105-5-200
PMCID: PMC543460

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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