Article

The MAGMA pipeline for comprehensive genomic analyses of clinical <i>Mycobacterium tuberculosis</i> samples

2023-10-05

Abstract excerpt

<h4>Background</h4> Whole genome sequencing (WGS) holds great potential for the management and control of tuberculosis. Accurate analysis of samples with low mycobacterial burden, which are characterized by low (<20x) coverage and high (>40%) levels of contamination, is challenging. We created the MAGMA (Maximum Accessible Genome for Mtb Analysis) bioinformatics pipeline for analysis of clinical Mtb samples. <...

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Literature Corpus work: fa27be2d-a385-5457-9e1a-40bf8ae6078a
DOI: 10.1101/2023.10.04.23296533

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