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Enhanced metagenomics-enabled transmission inference with TRACS

2024-08-20

Abstract excerpt

Coexisting strains of the same species within the human microbiota pose a substantial challenge to inferring the host-to-host transmission of both pathogenic and commensal microbes. Here, we present TRACS, a highly accurate algorithm for estimating genetic distances between strains at the level of individual SNPs, which is robust to intra-species diversity within the host. Analysis of well-characterised Faecal Mic...

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Identifiers and source

Literature Corpus work
eced142f-86c4-584e-9eea-8ac28a3cf0fe
DOI
10.1101/2024.08.19.608527
Open publication

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Enhanced metagenomics-enabled transmission inference with TRACSDOI 10.1101/2024.08.19.608527
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