Article

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies

2024-08-19

Abstract excerpt

Somatic variant detection is an integral part of cancer genomics analysis. While most methods have focused on short-read sequencing, long-read technologies now offer potential advantages in terms of repeat mapping and variant phasing. We present DeepSomatic, a deep learning method for detecting somatic SNVs and insertions and deletions (indels) from both short-read and long-read data, with modes for whole-genome a...

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Literature Corpus work: e21d4206-780f-5215-aace-0e7a22e93c89
DOI: 10.1101/2024.08.16.608331

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