Article

neissflow: Streamlining Genomic Epidemiology of <i>Neisseria gonorrhoeae</i> with Nextflow

2026-07-23

Abstract excerpt

Antimicrobial-resistant Neisseria gonorrhoeae ( Ng ) poses a growing global public health threat. Existing tools available for Ng genome analysis carry notable limitations, including incomplete resistance marker coverage, absence of species identification, and lack of phylogenetic capability. We developed neiss-flow, a highly parallelized Nextflow pipeline for Ng genome analysis that integrates five subworkflo...

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Literature Corpus work: 4721c976-732b-5fbd-ad04-81e85d13beeb
DOI: 10.64898/2026.07.22.740120

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