Article

Beyond consensus sequence: a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model

2022-10-20

Abstract excerpt

Genomic surveillance provides a data source complementary to contact tracing to resolve putative transmission chains. However, the role of within-host diversity in transmission is understudied due to a lack of experimental and clinical datasets that capture within-host diversity in both donors and recipients. Here, we assess the utility of deep-sequenced genomic surveillance within a mouse transmission model where...

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Literature Corpus work: ced45dcd-ddfb-5fd3-b768-a253c6301dcf
DOI: 10.1101/2022.10.17.512634

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