Article

fastder: fast, annotation-agnostic detection of expressed regions from RNA-seq coverage and splicing data

2026-06-25

Abstract excerpt

<h4>Background.</h4> Features from RNA-seq experiments are usually counted using a curated annotation (GENCODE, Ensembl, etc) as reference. This approach constrains RNA-seq counts to what the annotation considers a valid gene, transcript or exon, and misses transcription outside them. Moreover, reference annotations are known to be incomplete, and inadequate in some experiments altering splicing, and some disease...

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Literature Corpus work: af657088-bafa-5e21-bb55-be95f6e52ca9
DOI: 10.64898/2026.06.21.733617

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