Article

Rocker Models for Reliable Detection and Typing of Short Read Sequences Carrying β-lactamases

2020-11-25

Abstract excerpt

<title>Abstract</title> <p><bold>Background: </bold>Resistance genes encoding β-lactamases (BLs) confer resistance to the widely prescribed antibiotic class, β-lactams. Therefore, the prevalence of BL genes in clinical or environmental samples is important for assessing the public health risk and the spreading of these genes into pathogens. However, identification of genes encoding BLs from short read metagenomes...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 8104dd34-3860-5e10-a07e-deaa1556917a
DOI: 10.21203/rs.3.rs-113339/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Rocker Models for Reliable Detection and Typing of Short Read Sequences Carrying β-lactamasesDOI 10.21203/rs.3.rs-113339/v1Read

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing readsSemantic proximity Read

Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencingSemantic proximity Read

Shortest Unique Representative Hidden Markov Model (SurHMM) for Detecting Protein Toxins, Virulence Factors and Antibiotic Resistance GenesSemantic proximity Read

Sarand: Exploring Antimicrobial Resistance Gene Neighborhoods in Complex Metagenomic Assembly GraphsSemantic proximity Read

Predictive computational phenotyping and biomarker discovery using reference-free genome comparisonsSemantic proximity Read

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on <i>Escherichia coli</i>Semantic proximity Read

Short read sequence typing (SRST): multi-locus sequence types from short readsSemantic proximity Read

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.Semantic proximity Read

CARD k-mers: Unmasking the pathogen hosts and genomic contexts of antimicrobial resistance genes in metagenomic sequencesSemantic proximity Read

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli.Semantic proximity Read

Best of Both Worlds? Optimising Graph-Based Antimicrobial Resistance Gene Profiling in Long and Short-Read MetagenomesSemantic proximity Read

Resistome SNP Calling via Read Colored de Bruijn GraphsSemantic proximity Read