Article

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

2016-03-28

Abstract excerpt

<h4>ABSTRACT</h4> <h4>Motivation</h4> The highly portable Oxford Nanopore MinlON sequencer has enabled new applications of genome sequencing directly in the field. However, the MinlON currently relies on a cloud computing platform, Metrichor (metrichor.com), for translating locally generated sequencing data into basecalls. <h4>Results</h4> To allow offline and private analysis of MinlON data, we created Nanocal...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 7150108e-017f-53ca-a9e0-fed6a9edf32f
DOI: 10.1101/046086

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing DataDOI 10.1101/046086Read

SquiDBase: a community resource of raw nanopore data from microbesSemantic proximity Read

A single-molecule nanopore sequencing platformSemantic proximity Read

CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysisSemantic proximity Read

De novo sequencing and variant calling with nanopores using PoreSeq.Semantic proximity Read

A world of opportunities with nanopore sequencingSemantic proximity Read

Flexible and efficient handling of nanopore sequencing signal data with <i>slow5tools</i>Semantic proximity Read

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data.Semantic proximity Read

Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencingSemantic proximity Read

NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning AlgorithmSemantic proximity Read

Fast and sensitive mapping of nanopore sequencing reads with GraphMap.Semantic proximity Read

NanoSimFormer: an end-to-end transformer-based nanopore signal simulator with basecaller guidance.Semantic proximity Read

Fast and sensitive mapping of error-prone nanopore sequencing reads with GraphMapSemantic proximity Read