Article

vartracker: an end-to-end tool for pathogen longitudinal variant analysis and visualisation

2026-05-08

Abstract excerpt

Longitudinal sequencing can reveal fine-grained pathogen evolution during acute and chronic infections and inform public health responses. However, integrating ordered pathogen genomic data into a coherent evolutionary and clinical framework can be tedious and error-prone. We present vartracker, an open-source tool for longitudinal pathogen variant analysis and visualisation. Given an ordered sample manifest, vart...

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Literature Corpus work: 6045cf46-8df3-5f98-8584-fe2d6d3444e7
DOI: 10.64898/2026.05.06.723370

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