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vSNP: a SNP pipeline for the generation of transparent SNP matrices and phylogenetic trees from whole genome sequencing data sets.

BMC genomics - 1 Jun 2024

Hicks Jessica, Stuber Tod, Lantz Kristina, Torchetti Mia, Robbe-Austerman Suelee

Abstract excerpt

BACKGROUND: Several single nucleotide polymorphism (SNP) pipelines exist, each offering its own advantages. Among them and described here is vSNP that has been developed over the past decade and is specifically tailored to meet the needs of diagnostic laboratories. Laboratories that aim to provide rapid whole genome sequencing results during outbreak investigations face unique challenges. vSNP addresses these...

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PMID: 38822271
DOI: 10.1186/s12864-024-10437-5
PMCID: PMC11143592

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