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Article

VariantDetective: an accurate all-in-one pipeline for detecting consensus bacterial SNPs and SVs.

Bioinformatics (Oxford, England) - 1 Feb 2024

Charron Philippe, Kang Mingsong

Abstract excerpt

MOTIVATION: Genomic variations comprise a spectrum of alterations, ranging from single nucleotide polymorphisms (SNPs) to large-scale structural variants (SVs), which play crucial roles in bacterial evolution and species diversification. Accurately identifying SNPs and SVs is beneficial for subsequent evolutionary and epidemiological studies. This study presents VariantDetective (VD), a novel, user-friendly, and...

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PMID: 38366603
DOI: 10.1093/bioinformatics/btae066
PMCID: PMC10898327

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