Article

<i>PathogenSurveillance</i> : an automated pipeline for population genomic analyses and pathogen identification

2025-10-31

Abstract excerpt

Whole genome sequencing (WGS) offers a comprehensive, organism-agnostic method that effectively meets the need for efficient, reliable, and standardized responses to emerging threats from pathogens and pests. Here, we present PathogenSurveillance , an open-source and automated Nextflow pipeline for population genomic analyses of WGS data. It is designed with features tailored for biosurveillance and is suitable f...

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Literature Corpus work: ca23d2b7-d428-537f-9705-5b8162d4fff0
DOI: 10.1101/2025.10.31.685798

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