GenomicGapID: Leveraging Spatial Distribution of Conserved Genomic Sites for Broad-Spectrum Microbial Identification

Abstract excerpt

<h4>ABSTRACT</h4> Bacterial detection and identification methods can be broadly classified as either untargeted with expansive taxonomic coverage or targeted with narrow taxonomic focus. Untargeted approaches, such as culture and sequencing, are often time-consuming and/or costly, whereas targeted methods, such as PCR, can offer faster and more cost-effective results but require a priori knowledge of the likely p...

Topics

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• Antifungal resistance and susceptibility
• Bacterial Infections
• Disease Outbreaks
• Genome, Bacterial
• Mycorrhizal Fungi and Plant Interactions
• Plant Pathogens and Fungal Diseases
• Polymorphism, Single Nucleotide
• Real-Time Polymerase Chain Reaction

Identifiers and source

Literature Corpus work

5dc665e5-daf0-58dc-8ef3-74e9517a0ea0

DOI

10.1101/2024.10.07.617038