Article

Exploring SNP Filtering Strategies: The Influence of Strict vs Soft Core

2024-08-28

Abstract excerpt

<h4>ABSTRACT</h4> Phylogenetic analyses are crucial for understanding microbial evolution and infectious disease transmission. Bacterial phylogenies are often inferred from single nucleotide polymorphism (SNP) alignments, with SNPs as the fundamental signal within these data. SNP alignments can be reduced to a ‘strict core’ by removing those sites which do not have data present in every sample. However, as sample...

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Literature Corpus work: 4075fd32-9f39-579a-93a9-09c86c750449
DOI: 10.1101/2024.08.26.609800

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