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Article

minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data.

PeerJ - 1 Jan 2023

Hoon Kian Soon, Holt Deborah C, Auburn Sarah, Shaw Peter, Giffard Philip M

Abstract excerpt

Here, we present the R package, minSNPs. This is a re-development of a previously described Java application named Minimum SNPs. MinSNPs assembles resolution-optimised sets of single nucleotide polymorphisms (SNPs) from sequence alignments such as genome-wide orthologous SNP matrices. MinSNPs can derive sets of SNPs optimised for discriminating any user-defined combination of sequences from all others....

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Identifiers

PMID: 37250706
DOI: 10.7717/peerj.15339
PMCID: PMC10224671

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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