Article

PAV-spotter: using signal cross-correlations to identify Presence/Absence Variation in target capture data

2024-10-29

Abstract excerpt

High throughput sequencing technologies have become essential in the fields of evolutionary biology and genomics. When dealing with non-model organisms or genomic gigantism, sequencing whole genomes is still relatively costly and therefore reduced-genome representations are frequently obtained, for instance by ‘target capture’ approaches. While computational tools exist that can handle target capture data and iden...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 31b2116c-6773-546e-8a2d-72418885c251
DOI: 10.1101/2024.10.25.620064

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

PAV-spotter: using signal cross-correlations to identify Presence/Absence Variation in target capture dataDOI 10.1101/2024.10.25.620064Read

sc-SPLASH provides ultra-efficient reference-free discovery in barcoded single-cell sequencingSemantic proximity Read

Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs.Semantic proximity Read

TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.Semantic proximity Read

De novo identification, differential analysis and functional annotation of SNPs from RNA-seq data in non-model speciesSemantic proximity Read

IsoCon: Deciphering highly similar multigene family transcripts from Iso-Seq dataSemantic proximity Read

Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain.Semantic proximity Read

Pangenome-based association testing between a structural variant located upstream of the KIT gene and head depigmentation across a diverse panel of cattle breeds.Semantic proximity Read

Accurate characterization of CRISPR-Cas9 genome editing outcomes and mosaicism with near-perfect long readsSemantic proximity Read

Insights from a genome-wide truth set of tandem repeat variationSemantic proximity Read

PISAD: reference-free intraspecies sample anomalies detection tool based on k-mer counting.Semantic proximity Read

Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management.Semantic proximity Read

Read mismapping from segmental duplications drives spurious <i>trans</i> associationsSemantic proximity Read