Article

CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment

2024-03-30

Abstract excerpt

Better interrogation of antimicrobial resistance requires new approaches to detect the associated genes in metagenomic samples. Targeted enrichment is an ideal method for their sequencing and characterization. However, no open-source, up-to-date hybridization probe set targeting antimicrobial resistance genes exists. Here we describe CARPDM, a probe design software package made to run alongside all future Comprehe...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 23472ec2-cbd9-5095-af55-dc74bbd4b991
DOI: 10.1101/2024.03.27.587061

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichmentDOI 10.1101/2024.03.27.587061Read

Escaping the Fate of Sisyphus: Assessing Resistome Hybridization Baits for Antimicrobial Resistance Gene CaptureSemantic proximity Read

PaREx: an open-source pipeline for the automated analysis of Pseudomonas aeruginosa resistomes from whole-genome sequences.Semantic proximity Read

PRAP: Pan Resistome analysis pipeline.Semantic proximity Read

BIOTIA-DX RESISTANCE Achieved the Best Antimicrobial Resistance Phenotype Prediction Accuracy at CAMDA 2026Semantic proximity Read

Keeping up with the pathogens: improved antimicrobial resistance detection and prediction from Pseudomonas aeruginosa genomes.Semantic proximity Read

Using Culture-Enriched Phenotypic Metagenomics for Targeted High-Throughput Monitoring of the Clinically Important Fraction of the β-Lactam ResistomeSemantic proximity Read

ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomicsSemantic proximity Read

Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterizationSemantic proximity Read

Rapid resistome mapping using nanopore sequencingSemantic proximity Read

Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli.Semantic proximity Read

A hybridization target enrichment approach for pathogen genomicsSemantic proximity Read

ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomicsSemantic proximity Read