Article

PHARP: A pig haplotype reference panel for genotype imputation

2021-06-03

Abstract excerpt

<h4>ABSTRACT</h4> Pigs not only function as a major meat source worldwide but also are commonly used as an animal model for studying human complex traits. A large haplotype reference panel has been used to facilitate efficient phasing and imputation of relatively sparse genome-wide microarray chips and low-coverage sequencing data. Using the imputed genotypes in the downstream analysis, such as GWASs, TWASs, eQTL...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 1c5e21d6-6947-5543-ae55-2454bf99e791
DOI: 10.1101/2021.06.03.446888

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

PHARP: A pig haplotype reference panel for genotype imputationDOI 10.1101/2021.06.03.446888Read

PHARP: a pig haplotype reference panel for genotype imputation.Semantic proximity Read

Imputation strategies for low-coverage whole-genome sequencing data and their effects on genomic prediction and genome-wide association studies in pigs.Semantic proximity Read

The construction of a haplotype reference panel using extremely low coverage whole genome sequences and its application in genome-wide association studies and genomic prediction in Duroc pigs.Semantic proximity Read

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs.Semantic proximity Read

GWAS of Reproductive Traits in Large White Pigs on Chip and Imputed Whole-Genome Sequencing Data.Semantic proximity Read

Accurate haplotype construction and detection of selection signatures enabled by high quality pig genome sequences.Semantic proximity Read

An imputed whole-genome sequence-based GWAS approach pinpoints causal mutations for complex traits in a specific swine population.Semantic proximity Read

Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs.Semantic proximity Read

Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs.Semantic proximity Read

The effect of high-density genotypic data and different methods on joint genomic prediction: A case study in large white pigs.Semantic proximity Read

Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels.Semantic proximity Read

Characterization of a haplotype-reference panel for genotyping by low-pass sequencing in Swiss Large White pigs.Semantic proximity Read