Article

HierCC: A multi-level clustering scheme for population assignments based on core genome MLST

2020-11-26

Abstract excerpt

<h4>Motivation</h4> Routine infectious disease surveillance is increasingly based on large-scale whole genome sequencing databases. Real-time surveillance would benefit from immediate assignments of each genome assembly to hierarchical population structures. Here we present HierCC, a scalable clustering scheme based on core genome multi-locus typing that allows incremental, static, multi-level cluster assignments...

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Literature Corpus work: 69e5bcfc-91d3-57c8-9731-7b346dc5653f
DOI: 10.1101/2020.11.25.397539

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