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Article

EcoliTyper: a species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli.

BMC bioinformatics - 9 Jun 2026

Beckley Brown, Amarh Vincent

Abstract excerpt

BACKGROUND: Escherichia coli is a major bacterial pathogen associated with a high global burden of disease. Effective surveillance requires integrated genomic analysis, but current methods rely on multiple independent tools for sequence typing, serotyping, plasmid screening, and profiling of antimicrobial resistance (AMR) and virulence factors. This fragmented workflow could complicates analysis and hinders...

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Identifiers

PMID: 42265598
DOI: 10.1186/s12859-026-06529-6
PMCID: PMC13480193

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

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