A Snakemake-based bacterial whole genome comparison pipeline for multi-group clinical isolates

Abstract excerpt

Organisms have continuously evolved in response to environmental conditions. Pathogenic bacteria evolve under host and environmental pressures, reshaping their genomes through insertions, inversions, deletions, and duplications during infection. In clinical settings, phenotypic traits of pathogenic bacteria such as virulence or antimicrobial resistance directly affect disease severity, transmission, and treatment....

Topics

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• Bacterial Identification and Susceptibility Testing
• Cross Infection
• Datasets as Topic
• Epidemiological Monitoring
• Gastrointestinal Microbiome
• Klebsiella Infections
• Klebsiella pneumoniae
• Mycobacterium research and diagnosis

Identifiers and source

Literature Corpus work

bd1e22b4-c92b-581a-b686-902405d095b1

DOI

10.64898/2026.06.25.734687