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StaphScope: a species-optimized computational pipeline for rapid and accessible Staphylococcus aureus genotyping and surveillance.

BMC genomics - 6 Feb 2026

Beckley Brown, Amarh Vincent

Abstract excerpt

Staphylococcus aureus, particularly methicillin-resistant S. aureus (MRSA), poses a persistent global health challenge. Genomic surveillance is essential but often hindered by the bioinformatics complexity of integrating multiple, disparate analysis tools. To address this, we developed StaphScope, a specialized computational pipeline for the comprehensive genotyping of S. aureus. Distributed as a single-install...

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Identifiers

PMID: 41645058
DOI: 10.1186/s12864-026-12609-x
PMCID: PMC12977718

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

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