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The distribution of antimicrobial resistance genes across phylogroup, host species and geography in 16,000 publicly-available<i>E. coli</i>genomes

2022-08-06

Abstract excerpt

E. coli is a highly diverse bacterial species that generates a huge global burden of antimicrobial-resistant infections. A wealth of whole genome sequence data is available on public databases for this species, presenting new opportunities to analyse the distribution of antimicrobial resistance (AMR) genes across its genetic and ecological diversity. We extracted and categorised metadata on host species and geogra...

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Literature Corpus work
017392f4-2af6-50d3-bbf2-e498bc6b4184
DOI
10.1101/2022.08.05.22278465
Open publication

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