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ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping.

Microbial genomics - 1 Jul 2018

Beghain Johann, Bridier-Nahmias Antoine, Le Nagard Hervé, Denamur Erick, Clermont Olivier

Abstract excerpt

The genus Escherichia is composed of Escherichia albertii, E. fergusonii, five cryptic Escherichia clades and E. coli sensu stricto. Furthermore, the E. coli species can be divided into seven main phylogroups termed A, B1, B2, C, D, E and F. As specific lifestyles and/or hosts can be attributed to these species/phylogroups, their identification is meaningful for epidemiological studies. Classical phenotypic tests...

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PMID: 29916797
DOI: 10.1099/mgen.0.000192
PMCID: PMC6113867

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Source receipt: pubmed, retrieved 7 Sept 2026.

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