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Article

Genome-wide profiling of polymorphic short tandem repeats and their influence on gene expression and trait variation in diverse rice populations.

Journal of genetics and genomics = Yi chuan xue bao - 1 Jun 2025

Tan Xiyu, Zeng Wanyong, Yang Yujian, Lin Zhansheng, Li Fuquan, Liu Jianhong, Chen Shaotong, Liu Yao-Guang, Xie Weibo, Xie Xianrong

Abstract excerpt

Short tandem repeats (STRs) modulate gene expression and contribute to trait variation. However, a systematic evaluation of the genomic characteristics of STRs has not been conducted, and their influence on gene expression in rice remains unclear. Here, we construct a map of 137,629 polymorphic STRs in the rice (Oryza sativa L.) genome using a population-scale resequencing dataset. A genome-wide survey...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 40089018
DOI: 10.1016/j.jgg.2025.03.005

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 3 Sept 2026.

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